CTMC-v1
Studying cell migration is crucial for better understanding fundamental biological processes such as wound healing, treatment and prevention of cancer, and the development and analysis of drug and immune responses. We introduce a human-annotated live-cell imaging dataset for cell tracking, that is larger and more diverse than prior cell tracking datasets. The dataset consists of 86 live-cell imaging videos that represent 14 different cell lines of various shapes and sizes, with each cell annotated using bounding boxes. We hope this challenge will contribute to the design of more generalized tracking algorithms. The team which achieves the maximum average MOTA wins this challenge. Winners of CTMC 2024 will be announced at the CVMI workshop at CVPR 2024. Please scroll to the end of the page to download the dataset. More details can be found in our paper and on our website. For questions regarding this dataset challenge, please email Atharva Peshkar at atharva.peshkar@colorado.edu.
Training Set
| Sample | Name | FPS | Resolution | Length | Tracks | Boxes | Density | Description | Source | Ref. |
 | U2O-S-run05 | 30 | 400x320 | 1972 (01:06) | 45 | 34186 | 17.3 | Human Bone Osteosarcoma | link | [1] |
 | U2O-S-run03 | 30 | 400x320 | 1972 (01:06) | 18 | 12032 | 6.1 | Human Bone Osteosarcoma | link | [1] |
 | RK-13-run03 | 30 | 400x320 | 900 (00:30) | 9 | 6227 | 6.9 | Normal Rabbit Kidney | link | [1] |
 | RK-13-run01 | 30 | 400x320 | 1500 (00:50) | 6 | 6336 | 4.2 | Normal Rabbit Kidney | link | [1] |
 | PL1Ut-run05 | 30 | 400x320 | 1470 (00:49) | 6 | 2958 | 2.0 | Raccoon Uterus | link | [1] |
 | PL1Ut-run03 | 30 | 400x320 | 1848 (01:02) | 61 | 48692 | 26.3 | Raccoon Uterus | link | [1] |
 | PL1Ut-run01 | 30 | 400x320 | 1731 (00:58) | 16 | 10397 | 6.0 | Raccoon Uterus | link | [1] |
 | OK-run07 | 30 | 400x320 | 1620 (00:54) | 66 | 34628 | 21.4 | Opossum Kidney Cortex Proximal Tubule | link | [1] |
 | OK-run05 | 30 | 400x320 | 1350 (00:45) | 34 | 19232 | 14.2 | Opossum Kidney Cortex Proximal Tubule | link | [1] |
 | OK-run03 | 30 | 400x320 | 1350 (00:45) | 83 | 39597 | 29.3 | Opossum Kidney Cortex Proximal Tubule | link | [1] |
 | OK-run01 | 30 | 400x320 | 1200 (00:40) | 41 | 16842 | 14.0 | Opossum Kidney Cortex Proximal Tubule | link | [1] |
 | MDOK-run09 | 30 | 400x320 | 2073 (01:09) | 18 | 21103 | 10.2 | Madin-Darby Ovine Kidney | link | [1] |
 | MDOK-run07 | 30 | 400x320 | 1972 (01:06) | 13 | 12139 | 6.2 | Madin-Darby Ovine Kidney | link | [1] |
 | MDOK-run05 | 30 | 400x320 | 1894 (01:03) | 20 | 21436 | 11.3 | Madin-Darby Ovine Kidney | link | [1] |
 | MDOK-run03 | 30 | 400x320 | 763 (00:25) | 8 | 6035 | 7.9 | Madin-Darby Ovine Kidney | link | [1] |
 | MDOK-run01 | 30 | 400x320 | 2100 (01:10) | 3 | 4186 | 2.0 | Madin-Darby Ovine Kidney | link | [1] |
 | MDBK-run09 | 30 | 400x320 | 2195 (01:13) | 59 | 38481 | 17.5 | Madin-Darby Bovine Kidney | link | [1] |
 | MDBK-run07 | 30 | 400x320 | 1824 (01:01) | 125 | 70939 | 38.9 | Madin-Darby Bovine Kidney | link | [1] |
 | MDBK-run05 | 30 | 400x320 | 1500 (00:50) | 58 | 45457 | 30.3 | Madin-Darby Bovine Kidney | link | [1] |
 | MDBK-run03 | 30 | 400x320 | 780 (00:26) | 31 | 13835 | 17.7 | Madin-Darby Bovine Kidney | link | [1] |
 | MDBK-run01 | 30 | 400x320 | 368 (00:12) | 55 | 14552 | 39.5 | Madin-Darby Bovine Kidney | link | [1] |
 | LLC-MK2-run07 | 30 | 400x320 | 2187 (01:13) | 56 | 40250 | 18.4 | Rhesus Monkey Kidney | link | [1] |
 | LLC-MK2-run05 | 30 | 400x320 | 1861 (01:02) | 25 | 12379 | 6.7 | Rhesus Monkey Kidney | link | [1] |
 | LLC-MK2-run03 | 30 | 400x320 | 2040 (01:08) | 22 | 18114 | 8.9 | Rhesus Monkey Kidney | link | [1] |
 | LLC-MK2-run02a | 30 | 400x320 | 1050 (00:35) | 31 | 12766 | 12.2 | Rhesus Monkey Kidney | link | [1] |
 | LLC-MK2-run01 | 30 | 400x320 | 1866 (01:02) | 28 | 18147 | 9.7 | Rhesus Monkey Kidney | link | [1] |
 | CV-1-run03 | 30 | 400x320 | 1613 (00:54) | 7 | 6305 | 3.9 | Normal African Green Monkey Kidney | link | [1] |
 | CV-1-run01 | 30 | 400x320 | 1842 (01:01) | 9 | 10589 | 5.7 | Normal African Green Monkey Kidney | link | [1] |
 | CRE-BAG2-run03 | 30 | 400x320 | 1652 (00:55) | 83 | 30156 | 18.3 | Albino Swiss Mouse Embryo Moloney Murine Leukemia Virus Transfected Cells | link | [1] |
 | CRE-BAG2-run01 | 30 | 400x320 | 1931 (01:04) | 57 | 25861 | 13.4 | Albino Swiss Mouse Embryo Moloney Murine Leukemia Virus Transfected Cells | link | [1] |
 | BPAE-run07 | 30 | 400x320 | 2160 (01:12) | 21 | 32522 | 15.1 | Bovine Pulmonary Artery | link | [1] |
 | BPAE-run05 | 30 | 400x320 | 1775 (00:59) | 10 | 8309 | 4.7 | Bovine Pulmonary Artery | link | [1] |
 | BPAE-run03 | 30 | 400x320 | 1803 (01:00) | 24 | 29112 | 16.1 | Bovine Pulmonary Artery | link | [1] |
 | BPAE-run01 | 30 | 400x320 | 1568 (00:52) | 175 | 172074 | 109.7 | Bovine Pulmonary Artery | link | [1] |
 | APM-run05 | 30 | 400x320 | 2006 (01:07) | 38 | 21091 | 10.5 | African Water Mongoose Skin | link | [1] |
 | APM-run03 | 30 | 400x320 | 1458 (00:49) | 18 | 9486 | 6.5 | African Water Mongoose Skin | link | [1] |
 | APM-run01 | 30 | 400x320 | 1794 (01:00) | 11 | 8333 | 4.6 | African Water Mongoose Skin | link | [1] |
 | A-549-run03 | 30 | 400x320 | 1592 (00:53) | 24 | 18674 | 11.7 | Male Human Lung Carcinoma | link | [1] |
 | A-10-run07 | 30 | 400x320 | 2462 (01:22) | 45 | 36712 | 14.9 | Embryonic Rat Thoracic Aorta Medial Layer | link | [1] |
 | A-10-run05 | 30 | 400x320 | 1571 (00:52) | 6 | 6821 | 4.3 | Embryonic Rat Thoracic Aorta Medial Layer | link | [1] |
 | A-10-run03 | 30 | 400x320 | 1891 (01:03) | 6 | 8795 | 4.7 | Embryonic Rat Thoracic Aorta Medial Layer | link | [1] |
 | A-10-run01 | 30 | 400x320 | 1969 (01:06) | 14 | 13367 | 6.8 | Embryonic Rat Thoracic Aorta Medial Layer | link | [1] |
 | 3T3-run09 | 30 | 400x320 | 2114 (01:10) | 20 | 8729 | 4.1 | Albino Swiss Mouse Embryo | link | [1] |
 | 3T3-run07 | 30 | 400x320 | 1931 (01:04) | 9 | 5266 | 2.7 | Albino Swiss Mouse Embryo | link | [1] |
 | 3T3-run05 | 30 | 400x320 | 2039 (01:08) | 53 | 36079 | 17.7 | Albino Swiss Mouse Embryo | link | [1] |
 | 3T3-run03 | 30 | 400x320 | 2062 (01:09) | 38 | 19219 | 9.3 | Albino Swiss Mouse Embryo | link | [1] |
 | 3T3-run01 | 30 | 400x320 | 1770 (00:59) | 11 | 8777 | 5.0 | Albino Swiss Mouse Embryo | link | [1] |
| Total | 80389 frm. (2679 s.) | 1616 | 1097223 | 13.6 |
Test Set
| Sample | Name | FPS | Resolution | Length | Tracks | Boxes | Density | Description | Source | Ref. |
 | U2O-S-run04 | 30 | 400x320 | 2126 (01:11) | 63 | 43004 | 20.2 | Human Bone Osteosarcoma | link | [1] |
 | U2O-S-run02 | 30 | 400x320 | 4437 (02:28) | 74 | 138313 | 31.2 | Human Bone Osteosarcoma | link | [1] |
 | RK-13-run02 | 30 | 400x320 | 1050 (00:35) | 20 | 15981 | 15.2 | Normal Rabbit Kidney | link | [1] |
 | PL1Ut-run04 | 30 | 400x320 | 2062 (01:09) | 19 | 14106 | 6.8 | Raccoon Uterus | link | [1] |
 | PL1Ut-run02 | 30 | 400x320 | 1350 (00:45) | 52 | 24585 | 18.2 | Raccoon Uterus | link | [1] |
 | OK-run06 | 30 | 400x320 | 1912 (01:04) | 40 | 29414 | 15.4 | Opossum Kidney Cortex Proximal Tubule | link | [1] |
 | OK-run04 | 30 | 400x320 | 900 (00:30) | 18 | 6301 | 7.0 | Opossum Kidney Cortex Proximal Tubule | link | [1] |
 | OK-run02 | 30 | 400x320 | 2110 (01:10) | 53 | 31583 | 15.0 | Opossum Kidney Cortex Proximal Tubule | link | [1] |
 | MDOK-run08 | 30 | 400x320 | 1765 (00:59) | 16 | 15879 | 9.0 | Madin-Darby Ovine Kidney | link | [1] |
 | MDOK-run06 | 30 | 400x320 | 2364 (01:19) | 4 | 5766 | 2.4 | Madin-Darby Ovine Kidney | link | [1] |
 | MDOK-run04 | 30 | 400x320 | 1618 (00:54) | 2 | 2786 | 1.7 | Madin-Darby Ovine Kidney | link | [1] |
 | MDOK-run02 | 30 | 400x320 | 2001 (01:07) | 5 | 6408 | 3.2 | Madin-Darby Ovine Kidney | link | [1] |
 | MDBK-run10 | 30 | 400x320 | 2402 (01:20) | 77 | 48358 | 20.1 | Madin-Darby Bovine Kidney | link | [1] |
 | MDBK-run08 | 30 | 400x320 | 2012 (01:07) | 35 | 23339 | 11.6 | Madin-Darby Bovine Kidney | link | [1] |
 | MDBK-run06 | 30 | 400x320 | 1717 (00:57) | 49 | 26854 | 15.6 | Madin-Darby Bovine Kidney | link | [1] |
 | MDBK-run04 | 30 | 400x320 | 2046 (01:08) | 41 | 40245 | 19.7 | Madin-Darby Bovine Kidney | link | [1] |
 | MDBK-run02 | 30 | 400x320 | 583 (00:19) | 3 | 972 | 1.7 | Madin-Darby Bovine Kidney | link | [1] |
 | LLC-MK2-run06 | 30 | 400x320 | 1716 (00:57) | 34 | 20822 | 12.1 | Rhesus Monkey Kidney | link | [1] |
 | LLC-MK2-run04 | 30 | 400x320 | 1894 (01:03) | 6 | 6449 | 3.4 | Rhesus Monkey Kidney | link | [1] |
 | LLC-MK2-run02b | 30 | 400x320 | 839 (00:28) | 16 | 8901 | 10.6 | Rhesus Monkey Kidney | link | [1] |
 | CV-1-run04 | 30 | 400x320 | 1050 (00:35) | 1 | 1033 | 1.0 | Normal African Green Monkey Kidney | link | [1] |
 | CV-1-run02 | 30 | 400x320 | 293 (00:10) | 3 | 869 | 3.0 | Normal African Green Monkey Kidney | link | [1] |
 | CRE-BAG2-run04 | 30 | 400x320 | 1827 (01:01) | 44 | 16142 | 8.8 | Albino Swiss Mouse Embryo Moloney Murine Leukemia Virus Transfected Cells | link | [1] |
 | CRE-BAG2-run02 | 30 | 400x320 | 2543 (01:25) | 185 | 96239 | 37.8 | Albino Swiss Mouse Embryo Moloney Murine Leukemia Virus Transfected Cells | link | [1] |
 | BPAE-run06 | 30 | 400x320 | 2119 (01:11) | 35 | 25408 | 12.0 | Bovine Pulmonary Artery | link | [1] |
 | BPAE-run04 | 30 | 400x320 | 1905 (01:04) | 24 | 26289 | 13.8 | Bovine Pulmonary Artery | link | [1] |
 | BPAE-run02 | 30 | 400x320 | 2154 (01:12) | 55 | 50241 | 23.3 | Bovine Pulmonary Artery | link | [1] |
 | APM-run06 | 30 | 400x320 | 2382 (01:19) | 38 | 24145 | 10.1 | African Water Mongoose Skin | link | [1] |
 | APM-run04 | 30 | 400x320 | 2119 (01:11) | 25 | 14367 | 6.8 | African Water Mongoose Skin | link | [1] |
 | APM-run02 | 30 | 400x320 | 2069 (01:09) | 27 | 16634 | 8.0 | African Water Mongoose Skin | link | [1] |
 | A-549-run04 | 30 | 400x320 | 1881 (01:03) | 37 | 33061 | 17.6 | Male Human Lung Carcinoma | link | [1] |
 | A-549-run02 | 30 | 400x320 | 2284 (01:16) | 45 | 50462 | 22.1 | Male Human Lung Carcinoma | link | [1] |
 | A-10-run06 | 30 | 400x320 | 1890 (01:03) | 7 | 8393 | 4.4 | Embryonic Rat Thoracic Aorta Medial Layer | link | [1] |
 | A-10-run04 | 30 | 400x320 | 1200 (00:40) | 1 | 1196 | 1.0 | Embryonic Rat Thoracic Aorta Medial Layer | link | [1] |
 | A-10-run02 | 30 | 400x320 | 2164 (01:12) | 6 | 8990 | 4.2 | Embryonic Rat Thoracic Aorta Medial Layer | link | [1] |
 | 3T3-run08 | 30 | 400x320 | 1350 (00:45) | 11 | 3549 | 2.6 | Albino Swiss Mouse Embryo | link | [1] |
 | 3T3-run06 | 30 | 400x320 | 1680 (00:56) | 32 | 15038 | 9.0 | Albino Swiss Mouse Embryo | link | [1] |
 | 3T3-run04 | 30 | 400x320 | 2160 (01:12) | 45 | 20559 | 9.5 | Albino Swiss Mouse Embryo | link | [1] |
 | 3T3-run02 | 30 | 400x320 | 2135 (01:11) | 36 | 25930 | 12.1 | Albino Swiss Mouse Embryo | link | [1] |
| Total | 72109 frm. (2405 s.) | 1284 | 948611 | 13.2 |
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Development Kit
References:
| [1] | CTMC: Cell Tracking with Mitosis Detection Dataset Challenge. In The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, 2020. |
